StaVia Tutorial Videos
StaVia Installation
Via can also be run on Linux and MAC, setup is similar. with hnswlib potentially needing to be installed using pip or conda forge prior to pip install via
StaVia Implementation and Basic Usage
Main sections covered in usage tutorial
Initializing StaVia: setting the root, key parameters
Visualization: cluster level trajectory and terminals states
Visualization: hi-resolution edge drawings
Visualization: Mapping trajectory paths onto single-cell embeddings
Visualization: Animations of trajectories
Gene trends: along pseudotime
Lineage probabilistic pathways
StaVia for Spatial MERFISH data
Main sections
Initializing spatial parameters
Visualization on different levels (cluster graph, single cell and Atlas View)